Rahul Agarwal
I'm a Bioinformatician and Programmer
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A-allele of SLC24A5 gene is found to be responsible for variation in skin color of South-East...
By Rahul Agarwal 4596 days agoMore is the A -allele, More is fairer the Skin !!Your stress/depression came from ancestor
By Rahul Agarwal 4423 days agoStress drives changes in the sperm microRNA which carry forward to later generationsGeneProf: analysis of high-throughput sequencing experiment
By Jit 3265 days agowww.geneprof.org - GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis for next-gen data! Some of...1mb long DNA with Nanopore technology
By Jit 3098 days agoLongest read of 1mb achievements with NanoporeHeap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput...
By Jit 2978 days agogithub.com - Heap, that enables robustly sensitive and accurate calling of SNPs, particularly with a low coverage NGS data, which must be aligned to the reference genome sequences in advance. To reduce false positive SNPs, Heap determines genotypes and calls...HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
By Jit 2952 days agogithub.com - HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy. We found that previously described haplotype assembly methods are specialized for specific read...npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
By Shruti Paniwala 2925 days agojapsa.readthedocs.io - npScarf (jsa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single laptop for microbial datasets. In real-time mode, it can be integrated with simple...
