Rahul Nayak
A Bioinformatician
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List of generic simulation software/tools/resource with brief description and homepage !!!
Last updated 4408 days ago by JitList of generic simulation software/tools/resource with brief description and homepage ALF A Simulation Framework for Genome Evolution http://www.cbrg.ethz.ch/alfBayesian Serial SimCoal Bayesian Serial SimCoal, (BayeSSC) is a modification of...Bioinformatics tools and software
By Jit 3532 days agodrive5.com - USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARSE >OTU clustering for 16S and other marker genes....Software for genome assembly !
By LEGE 2015 days agoList of bioinformatics tools/Software Website References for genome assembly:-
List of Bioinformatics Software Tools for Next Generation Sequencing
Last updated 3579 days ago by JitCommercial tools Strand NGS offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biological Interpretation, etc. Supports workflows “one can import the sample data in... Five points for bioinformatics software/tools
By Jitendra Narayan 4597 days ago Comments (1)Some five points to keep in mind for bioinformatics software/tools-
Commercial and public next-gen-seq (NGS) software
Last updated 4189 days ago by Partek Comments (7)Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection,... -
Tools for Searching Repeats And Palindromic Sequences
Last updated 2882 days ago by Poonam Mahapatra Comments (2)What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later... EasyBuild
By Jit 3325 days agohpcugent.github.io - EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.A full list of supported software packages is available here.List of popular bioinformatics software/tools
By Jitendra Narayan 4616 days ago Comments (28)samtools.sourceforge.net - In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.ERGO 2.0 Bioinformatics suites
By Jit 3217 days agowww.igenbio.com - ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. Using Igenbio's proprietary algorithms, and the most comprehensive genomic database integrated with...
