Rahul Nayak
A Bioinformatician
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Bio7: an integrated development environment for ecological modeling, scientific image analysis and...
By Nidhi Rajput 1907 days agohttps://bio7.org/home-2/ - The application Bio7 is an integrated development environment for ecological modeling, scientific image analysis and statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge...DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms
By Neel 1615 days agohttp://www.ub.edu/dnasp/ - DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms using data from a single locus (a multiple sequence aligned -MSA data), or from several loci (a Multiple-MSA data, such as formats generated by some...DECIPHER; a software toolset for deciphering and managing biological sequences efficiently using...
By BioStar 2333 days agowww2.decipher.codes - DECIPHER is a software toolset that can be used for deciphering and managing biological sequences efficiently using the R programming language. The R package is distributed as platform independent source code under the GPL...modelStudio: a package automates the explanation of machine learning predictive models
By Jit 1923 days agomodeloriented.github.io - The modelStudio package automates the explanation of machine learning predictive models. This package generates advanced interactive and animated model explanations in the form of a serverless HTML site. It...Steps to find palindrome in genomes !
By BioStar 782 days agoPalindromes are sequences of nucleotides that read the same backward as forward.Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
By Jit 1505 days agoprakharg24.github.io - We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have...poRe: an R package for the visualization and analysis of nanopore sequencing data
By Jit 2714 days ago Comments (1)academic.oup.com - Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the...netGO: R-Shiny package for network-integrated pathway enrichment analysis
By Jit 1903 days agogithub.com - netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks. Currently, netGO supports analysis for four species...SVbyEye: R Package to visualize alignments between two or multiple DNA sequences
By LEGE 224 days agogithub.com - R Package to visualize alignments between two or multiple DNA sequences includinga number of functionalities to facilitate processing of alignments in PAF format. SVbyEye, an open-source R package to visualize and annotate sequence-to-sequence...SOAP2 : Short Oligonucleotide Analysis Package 2
By Poonam Mahapatra 2533 days agosoap.genomics.org.cn - SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast and accurate alignment for huge amounts of...
