console.cloud.google.com - List of publically available databases on google server.
More at https://software.broadinstitute.org/gatk/download/bundle
ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/GATK/.
ftp://ftp.broadinstitute.org/bundle/hg38/hg38bundle/
http://39.96.85.9/PPAI/ - PPAI can query aptamers and proteins, predict aptamers and predict protein-aptamer interactions in batch mode precisely and efficiently, which would be a novel bioinformatics tool for the research of protein-aptamer interactions. PPAI web-server is...
peerj.com - The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking and expensive undertaking, has become almost trivial for research labs with access to standard molecular biology and computational tools. However, there are a wide...
In an attempt to find a good Linux reference for bioinformatician and BOL readers, I was unsuccessful at finding a decent one on the Internet. So, we decided to make a cheat sheet for biological programmers.
In our day to day research activity, we need to securely copy our data from several to local computer and visa-versa. I am jotting down some of the commonly used SCP command for your future help. Hope you all will like it
What is Secure Copy?scp...
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NAME OF THE POST : Bioinformatician (Part time 3 days in a week) (One Position only)
DURATION : One Year
NAME OF THE PROJECT : Next generation sequencing facility
EDUCATIONAL QUALIFICATIONS : At least a...
TIP: By default, environments are installed into the envs directory in your conda directory. Run conda create --help for information on specifying a different path.
Use the Terminal or an Anaconda Prompt for the...
Subprocess is one of simplest way of running linux command from within python code
Example:
if you want to run fastqc for QC of fastq file:
from subprocess import Popen,PIPE,call
p=Popen(["fastqc","-f","fastq","-o",...
github.com - Ventoy is an open source tool to create bootable USB drive for ISO/WIM/IMG/VHD(x)/EFI files. With ventoy, you don't need to format the disk over and over, you just need to copy the image files to the USB drive and boot it. You can copy many image...