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swgis v2.0 : a seqword genomic island sniffer
By Abhimanyu Singh 2683 days agoeugi.bi.up.ac.za - swgis v2.0 is the modified version of the seqword genomic island sniffer. this version is specifically optimized for predicting genomic islands in eukaryotic genomes. swgis v2.0 was tested on several eukaryotic species of different lineages....Bourque Lab
The goal of the lab is to understand mammalian genomes using comparative genomic and epigenomic analyses. Areas of interest include: the evolution of regulatory sequences, the role of transposable elements in gene regulation and the impact of genome...Sequence Tube Maps: displays multiple genomic sequences in the form of a tube map
By Jit 2187 days agogithub.com - A JavaScript module for the visualization of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg) Link to working demo:...Large Language Models in Bioinformatics: Transforming Data Analysis and Interpretation
By LEGE 429 days agoThe integration of artificial intelligence (AI) into bioinformatics has ushered in a new era of computational biology. Among the most transformative advancements are large language models (LLMs), such as GPT and BERT, which leverage deep learning to...SOAP2 : Short Oligonucleotide Analysis Package 2
By Poonam Mahapatra 2845 days agosoap.genomics.org.cn - SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast and accurate alignment for huge amounts of...Genobuntu: Package for Next Generation Sequencing and Genome Assembly
By BioStar 2119 days agosourceforge.net - Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools.Commonly used biological software and...Genobuntu: A software package containing more than 70 software and packages oriented towards NGS...
By BioStar 2643 days agosourceforge.net - Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools. Commonly used biological...netGO: R-Shiny package for network-integrated pathway enrichment analysis
By Jit 2215 days agogithub.com - netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks. Currently, netGO supports analysis for four species...kebabs: package provides functionality for kernel based analysis of biological sequences via...
By Rahul Nayak 1464 days agowww.bioinf.jku.at - The kebabs package provides functionality for kernel based analysis of biological sequences via Support Vector Machine (SVM) based methods. Biological sequences include DNA, RNA, and amino acid (AA) sequences. Sequence kernels define...R package for visualising GO enrichment
By Jit 4611 days agoR package for visualising GO enrichment results as wordclouds is available at CRAN
