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Synima: a Synteny imaging tool for annotated genome assemblies
By Abhimanyu Singh 2917 days agogithub.com - Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included...Uncovering Evolution’s Blueprint: How ntSynt Is Changing Comparative Genomics
By Jitendra Narayan 6 days agoOver millions of years, evolution has shaped all life on Earth, leaving clues in the DNA of every organism. While different species look and act very differently, their genomes still hold signs of a shared evolutionary past. These connections show...JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
By Jit 2413 days agogithub.com - Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wikiAncient whole genome duplication (WGD) detection tools !
By Rahul Nayak 2058 days agoThere are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distribution map. Among them, Ks is defined as the average number of synonymous substitutions at each synonymous site, and there is...Phylogenetics
By Jitendra Narayan 4811 days ago006 - Phylogenetics Paul Andersen discusses the specifics of phylogenetics. The evolutionary relationships of organisms are discovered through both morphological and molecular data. A specific type of phylogenetic tree, the cladogram, is also...Mike Ritchie Lab
Mike Ritchie Lab primary research focus is the detection of susceptibility genes for common diseases such as cancer, diabetes, hypertension, and cardiovascular disease, among others. The approaches will involve the development and application of new...GPS DNA tracking - University of Sheffield
By Rahul Nayak 4551 days agoUniversity of Sheffield geneticist and bioinformatics expert Dr Eran Elhaik demonstrates the power of his new DNA research, which allows people to discover their genetic homeland from 1000 years ago. Find out more about our biological research here...Center for Molecular Dynamics Nepal (CMDN), Nepal
Center for Molecular Dynamics Nepal (CMDN), established 2007 prides itself as a research driven nongovernmental organization. Unlike other civil society organizations, CMDN is dedicated entirely to promoting research in the country. With its team of...Post-Doc Positions at the Institute of Evolution, University of Haifa, Haifa, Israel
We are looking for independent, motivated, diligent, laborious, dedicated Bioinformaticians as post-doctorate fellows for a project aimed at revealing the mechanisms of cancer-resistance and anti-cancer activity of the hypoxia-tolerant subterranean,...Manolis Kellis Lab
A major focus of our lab is understanding the effects of genetic variation on molecular phenotypes and human disease. We develop methods for integrating diverse functional genomic datasets of transcription, chromatin modifications, regulator...
