BOL

master.bioconductor.org - Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bioconductor packages. We will start from the FASTQ files, show how these were quantified to the reference transcripts, and prepare gene-level count...

the sequenced reads can be mapped to the organism’s genes to assess how differently the genes are expressed under the experimental circumstances as opposed to the control scenario. This is known as differential expression (DE) analysis

bactopia.github.io - Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is process your data with a broad set of tools, so that you can get to the fun part of analyses quicker! Bactopia was inspired by Staphopia, a...

scikit-learn.org - Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More...

http://readiab.org/ - IAB is primarily being developed by Greg Caporaso(GitHub/Twitter: @gregcaporaso) in the Caporaso Lab at Northern Arizona University. You can find information on the courses I teach on my teaching website and...

International Center for Excellence in Research (ICER): The ICER is a research center composed of the following three programs: 1....

Institut Pasteur de Tunis (IPT):The IPT is a research institution founded in 1883. IPT is under the supervision of the Ministry of  Health and is part of the Université El Manar of Tunis (Ministry of high Education). The missions...

Brief Overview of Snakemake Pipeline Commands

This is a comprehensive guide to prepare for your next coding interview. It's great for recent graduates and has questions and practice materials structured from traditional big tech interview formats.While it does not include the latest...

A while ago we posted a request for online resources on must-read papers in evolutionary biology, for a literature club. We received many answers in the meantime