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ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
By Neel 1802 days agogithub.com - ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 samples (recommended amount - 40 since we estimate variances from...Research Associate @ ICGEB, New Delhi.
Applications are invited for Research Associate position in the DBT Sponsored Bioinformatics Infrastructure Facility at ICGEB, New Delhi. Essential requirements: Experience of using bioinformatics tools. Experience of working in Linux. Basic...LoFreq*: A sequence-quality aware, ultra-sensitive variant caller for NGS data
By BioStar 1770 days agocsb5.github.io - LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or...SRF/JRF/RA @ UNIVERSITY OF HYDERABAD
SCHOOL OF CHEMISTRY, UNIVERSITY OF HYDERABAD Applications on plain paper along with details of CV (relevant photocopies of their qualifications/experience and reprints of published work to be attached) are invited from qualified candidates for...Parliament2: Runs a combination of tools to generate structural variant calls on whole-genome...
By Jit 1669 days agogithub.com - Parliament2 identifies structural variants in a given sample relative to a reference genome. These structural variants cover large deletion events that are called as Deletions of a region, Insertions of a sequence into a region, Duplications of a...Research Fellow in Bioinformatics @ Queen's University Belfast -Institute for Global Food...
Ref: 13/102900 Available immediately until 30th November 2015, to work on the development of bioinformatics approaches to aid analysis of data derived from the metabolomic profiling of biological matrices. The successful applicant will lead...DADA2: Fast and accurate sample inference from amplicon data with single-nucleotide resolution
By Jit 1503 days agobenjjneb.github.io - The DADA2 tutorial goes through a typical workflow for paired end Illumina Miseq data: raw amplicon sequencing data is processed into the table of exact amplicon sequence variants (ASVs) present in each sample. The DADA2...JRF @ NATIONAL JALMA INSTITUTE OF LEPROSY AND OTHER MYCOBACTERIAL DISEASES
NATIONAL JALMA INSTITUTE OF LEPROSY AND OTHER MYCOBACTERIAL DISEASES (INDIAN COUNCIL OF MEDICAL RESEARCH) P.O BOX 101, Dr. M. Miyazaki Marg, Tajganj, Agra - 282001 Applications are invited for a walk-in interview to be held in the Seminar...Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
By Jit 1410 days agogithub.com - Ktrim is written in C++ for GNU Linux/Unix platforms. After uncompressing the source package, you can find an executable file ktrim under bin/ directory compiled using g++ v4.8.5 and linked with libz...Post-doc in Systems Genetics
Gagneur lab at Gene Center, Ludwig-Maximilians-Universitaet, Munich, Germany Deadline for applications : January 15, 2014. Description : We seek a talented and motivated post-doc to develop computational methods for inferring the molecular...
