Rahul Agarwal
I'm a Bioinformatician and Programmer
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Environmental Genomics Group SciLifeLab/KTH Stockholm
By BioStar 1404 days agohttps://github.com/envgen - Useful Metagenomics resourcesNCBI Datasets pages
By BioStar 1181 days agoAssembly and Genome record pages now redirect to new NCBI Datasets pages.piRNA and Bioinformatics: Decoding the Guardians of the Genome
By LEGE 667 days agopiRNAs are the unsung guardians of the genome, safeguarding genetic material from transposable elements and contributing to gene regulation and epigenetic programming. Bioinformatics has opened the floodgates of discovery, unraveling the...Genomic architecture surrounding the fusion site of human chromosome 2
By LEGE 579 days agoThis fusion event is a key evolutionary marker distinguishing humans from other great apes, as humans have 46 chromosomes while chimpanzees, gorillas, and orangutans possess 48. The fusion occurred through an end-to-end joining of two ancestral...When Thousands of Bacterial Genomes Become One Giant Map
By LEGE 39 days agoDeveloped by Jérôme Arnoux and colleagues, PANORAMA is a computational tool designed to explore bacterial pangenomes—the complete collection of genetic possibilities found across a species or group of related organisms. Instead of looking at every...The Tree That Learned to Read Genomes
By BioStar 24 days agoA recent study by Webster and Chapman introduces Buscogeny, an open-source bioinformatics pipeline designed to make this process easier. The tool uses BUSCO (Benchmarking Universal Single-Copy Orthologs), which identifies conserved genes that are...Heatmapper: web-enabled heat mapping for all
By Jit 2926 days agowww2.heatmapper.ca - Heatmapper is a freely available web server that allows users to interactively visualize their data in the form of heat maps through an easy-to-use graphical interface. Heatmapper is a versatile tool that allows users to easily create a wide variety...LAST
By Archana Malhotra 3861 days agohttp://last.cbrc.jp/ - LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with...Stampy
By Abhi 3789 days agowww.well.ox.ac.uk - Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of...NCBI Magic-BLAST
By Jit 2973 days agoncbi.github.io - Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of...
