Comment on "Indexcov: fast coverage quality control for whole-genome sequencing"
Installing goleft ➜ falconUnzip_assembly bioconda install goleftzsh: command not found: bioconda➜ falconUnzip_assembly conda install goleft Solving environment: done ## Package Pl...2137 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
Bioinformatics jobs in Spain http://genome.crg.es/main/joboffers.php2142 days ago
2160 days ago
Comment on "Nanopolis: polish a genome assembly"
# Index the draft genome bwa index draft.fa # Align the basecalled reads to the d....bam -T reads.tmp - samtools index reads.sorted.bam python nanopolish_makerange.py draft.fa | parallel --results nanopolish.results -P 8 \ nan...2161 days ago
Comment on "Installing Porechop on Ubuntu !"
.../allONT.fasta -t 40 > ONT_choppedNcorrected.fa Loading reads/media/urbe/MyDDrive/ONTdata/allONT/allONT.fasta1,634,477 reads loaded Looking for known adapter sets10,000 / 10,000...2167 days ago
Comment on "Various scholarships around the world !!"
...Within 5 years of obtaining a PhD or under the age of 40 with a PhD (born no earlier than January 1, 1978)...018.* Researchers currently participating in the IBS research centers are NOT eligible to apply. &nbs...2181 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...ers unless overriden. [null] (Illumina Moleculo) pacbio (PacBio SMRT): -i25 -l50 -m1 -M1 -O1,1,2,2 -E1,1,1,1 -w200 -b0 -e0.30 -d0.30 ont2d (Oxford Nanopore): -i25 -l50 -m1 -M1 -O1,1...2184 days ago
2184 days ago
Comment on "Running Trinity on RNA-seq !"
...thods, including edgeR, DESeq2, Limma/Voom, and ROTS. Extract coding regions using TransDecoder and functionally annotate the transcripts using Trinotate. If your organism ha...2184 days ago
Comment on "Installing Perl environment on Linux"
curl -L http://cpanmin.us | perl - --sudo App::cpanminus The above is installing the "zero configuration CPAN modules installer" called cpanm. (Can take several minutes to install - don't break the process) and after - simply: cpanm Foo cpanm Module::One cpanm Another::Module2187 days ago