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3945 days ago
Five unique traits of effective computational biologist
...lar expression when they started a project on comparative genomics; the good biol...iological programmer also read about the BioPerl packages, genomics, DNA string,...ties too. As much as I hate to say it, when I am passionate about my work, I am w...3978 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...annoying process. Some of the packages like GD is the real pain. However, Installing Perl m...Download Perl module: Go to CPAN Search website and search fo...; : perl-ExtUtils-ParseXS &...e following message: Reading package lists... DoneBuilding de...3978 days ago
3972 days ago
Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3929 days ago
3980 days ago
Regular Expression Cheat Sheet
...he Regular Expressions Cheat Sheet, a quick reference guide for regular expressions, including symbols, ranges, grouping, assertions and some sample patterns to get you started.3980 days ago
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of po...3979 days ago
3972 days ago
Bio++ : C Language libraries for your biological need
...e. As Dennis Ritchie writes in his paper, "The Development of the C...f the initial aims was to retain compatibility with C to as large an...rical tools (numerical derivatives, parameter transforms...),A new l...proaches).Tree consensus methods, bipartitions, bootstrap value comp...3975 days ago
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Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...This work is supported through the development of open-source biological pathway and network databases an...nd stage active biological processes using molecular profiles Biological pathway and network databases an...3975 days ago
3975 days ago
Bioinformatician become producer/director !!!
...MOTIF mil gaya. BLASTana FASTAna. Hamari Sequence aapke pass hai. BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Database Search Ka...alW Kiya Hai GeneScan Karke Dekho Alignment Apna Sequence Parayi *Warning: It contain h...3946 days ago
Perl Poem: Parse it in both Perl and English!
...has written quite a few Perl poems, as well as a paper on Perl poetry that she pr...oetry Meets the Perl Programming Language". (The paper is available as misc/poetr...yet. accept (yourself, changes),bind (grief, despair); require truth, goodness...3946 days ago
Personalised Medicine - Animation
Two animated case scenarios set now and in the future. These highlight potential differences in the way patients are treated now, and how they might be treated as healthcare becomes more tailored.3932 days ago
Influenza animation - flu virus mechanism
...nfluenza. Client: Crucell Direction, Design & Animation: Daniel Lim, 2Preform Music & Sound Design: Javier Barrero, Logical Disorder Production Company: David Hager, All Terrain M...3880 days ago
Parse a genbank file using regular expressions
#! /usr/local/bin/perl -w $genbank = "genbank_file.txt"; open (GENBANK, $genbank) || die "cannot open $gb_report for reading: $!"; # Flag for multiline trans...2944 days ago
2944 days ago
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically wan...3558 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3554 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...ing his (well documented) lab page (http://gmbe.mam.tubitak.gov.tr/en) and BOL page http://bioinformaticsonline...d samples taken from the same patient and the reflection of th...time favourite bioinformatics package, and why? For me, t...on to this, even if the tools pass the benchmarking, researche...2390 days ago
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3980 days ago
Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp425 days ago
Comment on "Benchmarking Perl Module !"
...a simple and standardized way to measure and compare the performance of Perl cod...ou can install it using the following command: cpan Benchmark Write benchma...e per iteration. You can use these results to compare the performance of your Per...443 days ago