Results for "SEquences"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...visualize and interrogate comparisons among multiple complete genome sequences. http://syntenyminer.sourcefo...nalyze synteny, homologous genes and other conserved elements between sequences. This software is useful in s...2662 days ago
Computer simulation of genetic mechanism !!
...program to simulate the evolution of protein sequences under the constraints of the...to simulate the evolution of recombinant DNA sequences in continuous time http://sci...program that simulates highly divergent DNA sequences and protein superfamilies htt...3027 days ago
Structural variation: the hidden genomic treasure
...y, but it will be much more difficult to understand its phenotypic consequences. Structural variants...n gene expression can be identified but only a few examples of the consequences for species biology have been...2755 days ago
- ...cale studies, including simulation of multiple replicates and outputs sequences into NEXUS, MEGA, or FASTA fo...es. FastML A user-friendly tool for the reconstruction of ancestral sequences. FastML implements various no...
2582 days ago
List of genome announcement, notes and reporting journals
...enome report, Impact factor 4.2, Focused 1500-word papers (up to six tables or figures) that publish the main evolutionary message of new genome sequences as they become submitted to G...2060 days ago
String graph based genome assembly software and tools !
...lidation to remove the branches based on read coverage and paired-end information, resulting in high-quality consensus sequences of reads sharing the seeds. Such consensus sequences are then extended to contigs....2380 days ago
BBTools for bioinformatician !
...sp; Code: reformat.sh in=sequences.fasta out=renamed.fasta trd...gth, you can identify adapter sequences with BBMerge, like this (they...are set for relatively short sequences so if they are many megabases...sequence (or a set of primer sequences) against a set of reference s...2322 days ago
Basic command-line to run BLAST
...ein.faa These are protein sequences in FASTA format. FASTA format...nstead of nucleotides. How many sequences are in each one? grep -c...h] [-html] [-max_target_seqs num_sequences] [-num_threads int_value] [-u...h] [-html] [-max_target_seqs num_sequences] [-num_threads int_value] [-r...2296 days ago
List of motif discovery tools !
...ation Environment for Protein Sequences Use to predict function from...residues) in a set of protein sequences. Dasty2 -- an Ajax prote...y of long patterns in protein sequences Discover long patterns in pr...tions Predict signal peptide sequences and their cleavage positions...2045 days ago
CANU genome assembly parameters !
...es are: *.correctedReads.fasta.gz : file containing the input sequences after correction, trim and sp...consensus evidence. *.trimmedReads.fastq : file containing the sequences after correction and final tr...1997 days ago
