Results for "map"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...tain minor errors resulting from limitations in map construction methodologies....ing syntenic blocks in comparative genomics SynMap (http://genomevolution.org/wi...41096) Uncovering Synteny in Distant Genomes. MapSynteny (http://www.auto...2668 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp....p; Code: $ reformat.sh in=mapped.bam out=filtered.bam maxde...e I developed it to benchmark mapping algorithms, it is specifi...x the reference Code: $ bbmap.sh ref=reference.fasta [*]...2328 days ago
chromoMap-An R package for Interactive visualization and mapping of human chromosomes
chromoMap is an R package that provides...chromosomes allowing users to map chromosome elements (like gen...plot viz. the "chromosome heatmap" that, in addition to mapping...t on the same plot. But chromoMap plots provide a magnified vie...me at a location showing each mapped element in sequential orde...2198 days ago
- ...ons(kmer_int_type_t, std::vector&, std::vector >&, char, std::map&, int)’: ./analysis/DeBr..../analysis/GraphFromFasta.cc: In function ‘void report_iworm_graph(std::map<int, Pool>&, std::m...
2191 days ago
List of motif discovery tools !
...tlas of surface topography of proteins with structural and topographical mapping of functionally annotated...alculate evolutionary conservation scores of key amino acid residues and map them on protein structures....2051 days ago
Understanding reads mapping and flags !
...lit in to two or more parts, each part would be mapped to reference(it’s not hard-clipped), the total length of the mapped part is longger than read...gnment and Secondary Alignment: A read may map ambiguously to multiple locat...1895 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distribution map. Among them, Ks is defined as the average number of...1213 days ago
Frequently used bioinformatics tools for viral genome analysis !
...n Transfer Tool. Otto, T. D., Dillon, G. P., Degrave, W. S. & Berriman, M. Nucleic Acids Res. 39, e57 (2011). SAMtools: The Sequence Alignment/Map format and SAMtools. Li, H. e...1105 days ago
List of comparative genomics resources !
...eome data among species. SGN -- SOL Genomics Network A comparative map viewer dedicated to the biolo...-- a comparative genomics tool for circular genomes Generate graphical maps of circular genomes that sho...735 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
...variation and degree of heterozygosity in natural populations of Drosophila pseudoobscura. Genetics. 54:595-609. 1b. Sachidandam et al. 2001. A map of human genome sequence vari...735 days ago
