Protocol for De novo Genome Assembly using Illumina Reads
...nts between genomes from read mappings. Genome finishing tools:Semi-automated gap fillers:Gap filler -.../www.broadinstitute.org/igv/ Automated and semi automated annota...notationServerJCVI Annotation Service - http://www.jcvi.org/cms/research/projects/annotation-service/ Frequent command use for th...1256 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distribution map. Am...1207 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns...amp; Berriman, M. Nucleic Acids Res. 39, e57 (2011). SAMtools: The Sequence Alignment/Map for...1099 days ago
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List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins b...species. SGN -- SOL Genomics Network A comparative map v...e genomics tool for circular genomes Generate graphical maps of...729 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for...of Drosophila pseudoobscura. Genetics. 54:595-609. 1b. Sachidandam et al. 2001. A map of...729 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for...of Drosophila pseudoobscura. Genetics. 54:595-609. 1b. Sachidandam et al. 2001. A map of...629 days ago