Results for "Genome Sequence"
Blogs
Bioinformatics tools developed for Oxford Nanopore data analysis !
...-correction tool for nanopore sequence datahttps://github.com/jgur...nopolishNanopore analysis and genome assembly softwarehttps://github...t-detection tool for nanopore sequence datahttps://github.com/mitenj...q5x/poretools SSPACE-LongReadGenome scaffolding tool http://www.bas...2372 days ago
BBTools for bioinformatician !
...s the ability to simulate metagenomes. coverage=X will automati...are set for relatively short sequences so if they are many megabase...Code: $ randomreads.sh ref=genome.fasta out=reads.fq len=100 read...will forcibly align a primer sequence (or a set of primer sequences...2322 days ago
Basic command-line to run BLAST
....faa These are protein sequences in FASTA format. FASTA forma...contains one or more lines of sequence text. Note that the files ar...[-html] [-max_target_seqs num_sequences] [-num_threads int_value] [-...[-html] [-max_target_seqs num_sequences] [-num_threads int_value] [-...2296 days ago
Popular bioinformatics educational resources !
Followings are the list of popular bioinformatics educational resources Bii.a-star.edu...nology, Finland. Ornl.gov/sci/techresources/Human_Genome/education/education.shtml A...resource for introductory information on the Human Genome P...2244 days ago
- ...e three use cases: (1) Convert genome position from one genome assembly to another genome as...ld to another (3) Convert both genome position and dbSNP rs number...s follow: Deleted in new: Sequence intersects no chains Partially deleted in new: Sequence insufficiently intersects one...
2212 days ago
- ...no-deprecated -m64 -g -O2 -MT sequenceUtil.o -MD -MP -MF .deps/sequenceUtil.Tpo -c -o sequenceUtil....onRedKmerTable.o obj/analysis/sequenceUtil.o obj/analysis/stacktrace...e under development) # # --genome_guided_bam :genome guided mode, provide path to co...
2185 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is...ons in neuropeptide precursor sequences. Non-Redundant Patent S...on and ANalysis Tool Conduct genome wide functional and structural...onserved and specific protein sequence motifs. TreeDet -- Predi...2045 days ago
CANU genome assembly parameters !
...-d \ genomeSize=[g|m|k] \...smbl \ -d asm_test3 \ genomeSize=2m \ -maxThreads=2... : file containing the input sequences after correction, trim and s....fastq : file containing the sequences after correction and final t...1997 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have used the following assemblers Spades (v. 3.10.1)...18) Nanopolish (v. 0.8.3) I have used the following tools to assess genome a...1982 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include inserti...ositions, we can find one alignmnet position which sequence do not have large overlaps, i...1889 days ago
