Results for "Multiple Sequence Alignment Algorithms"
Blogs
Installing Perl environment on Linux
By using plenv, you can easily install and switch among different version of Perl. This w...mportant for many NGS analysis packages (e.g. Trinity). In this setting, you can use multiple C...2374 days ago
List of cancer genomics research web resources !
Major web resources for cancer genomics research CGHub https://cghub.ucsc.edu/ Comprehensive...matic pipelines; user-friendly reports SNP500Cancer http://snp500cancer.nci.nih.gov Sequence a...2373 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...BWA Fast nanopore data tuned alignment tool https://github.com/lh3/.../graphmap LASTNanopore tuned alignment toolhttp://last.cbrc.jp/ LIN...-correction tool for nanopore sequence datahttps://github.com/jgurtow...t-detection tool for nanopore sequence datahttps://github.com/mitenjai...2373 days ago
BBTools for bioinformatician !
...are set for relatively short sequences so if they are many megabases...genomes. In any case, if the alignment score is higher to one genome...will forcibly align a primer sequence (or a set of primer sequences)...------------Mutate.shSimulate multiple mutants from a known reference...2323 days ago
Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonstrat...descriptions int_value] [-num_alignments int_value] [-line_length li...[-html] [-max_target_seqs num_sequences] [-num_threads int_value] [-u...descriptions int_value] [-num_alignments int_value] [-line_length lin...2297 days ago
- LiftOver is a necesary step to bring all genetical analysis to the sam...s follow: Deleted in new: Sequence intersects no chains Partially deleted in new: Sequence insufficiently intersects one...uence insufficiently intersects multiple...equence sufficiently intersects multiple c...
2213 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is...ons in neuropeptide precursor sequences. Non-Redundant Patent Se...n-protein interactions across multiple species. PPSearch Search...onserved and specific protein sequence motifs. TreeDet -- Predic...2046 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include inserti...nbsp;(i.e. one portion of the alignment on for...nment. One read can align to multiple positions, we can find one alignmnet position which sequence do not have large overlaps, it...1890 days ago
- AWK is a standard tool on every POSIX-compliant UNIX system. It&rsqu...plit by the FS delimiter, # which defaults to white-space (multiple...ng with count of 0" : "Huh?"; # Blocks consisting of multiple l...
1889 days ago
- This is an extract of taxdump-readme.txt to be found at ftp://ftp.ncbi.nih.gov/pub/taxonomy/...entry lineage hidden subtree root flag (1 or 0) -- 1 if this subtree has no sequence d...
1601 days ago
