Results for "Multiple Sequence Alignment Algorithms"
Blogs
New Machine Learning Packages in R
Machine Learning autokeras v1.0.1: Implements an interface to&n...ctions to predict simultaneous multiple outcomes based on revised stacking algorithm...19) to detect and process sequences. See the vignette fo...mplements multi-Study Learning algorithms such as Merging, Study-Specif...1553 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 billion by 2025. H...nome services are suitable for custom/tailored projects that allow access to genomic sequence i...1312 days ago
Bioinformatics tools for telomere to telomere assembly !
...riptome Annotation by Modular Algorithms) – software designed...nerate high-quality consensus sequences from HiFi reads (Zev Kronenb...polymorphic sites within the sequences and removing potential chimer... – tool for splice alignment of long transcriptomic reads t...1045 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method...ng a large number of short DNA sequences and placing them back togeth...us knowledge of the source DNA sequence length, structure or composit...ed topics, identifying the DNA sequence...nutshell the protocol: Get the sequence f...1257 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-rela...example, in the development of source codes, standalone software/tools, and algorithms in bioinformatics programmes....690 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA...enome assemblies and assembly algorithms. Salzberg, S. L. et al. Gen...Kraken: ultrafast metagenomic sequence classification using exact alignments. Wood, D. E. & Salzberg,...9, e57 (2011). SAMtools: The Sequence Alignment/Map format and SAMtools. Li, H...1100 days ago
Illumina based assembly pipeline steps !
...ional) Variant calling Read alignment (Bowtie 2) Sort and index alignments (SAMtools) Primer sequence removal (iVar; amplicon data...C plots (mosdepth) Choice of multiple variant calling and consensus sequence generation routes (iVar varian...d visualisation for raw read, alignment,...930 days ago
Useful Bioinformatics Analysis Tools !
...ash;23, CoMSA Compressor of multiple sequence alignments of proteins. • &...CoMSA: compression of protein multiple sequence alignment files, Bioinformatics,&...27(6):860–862, FAMSA Multiple sequence alignment designed for huge families of...QuickProbs Multiple sequence alignment...916 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genomes Compare structural...sing Data from Comparisons of Multiple Vertebrate Genomes Access to whole genome alignments of human, mouse, rat and fi...er (ESTs and full-length mRNA sequences...730 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for e...1b. Sachidandam et al. 2001. A map of human genome sequence...ourable gene. Genet. Res. 23: 23-35. Understanding sequence v...730 days ago
