Results for "Bioinformatics Services"
Blogs
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is u...only favoured over Perl, some bioinformatics software, such as the standal.... IPC::Open2 More at https://bioinformaticsonline.com/snippets/view/42919...on: a2p More help at https://bioinfor...689 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis,...zhiyang2 012/WGDdetectorhttps://bmcbioinformatics.biomedcentral.com/articles/10...:// github.com/arzwa/wgdhttps://bmcbioinformatics.biomedcentral.com/articles/10...e, you need to register at http:// bioinfor...1207 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong S...Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Ad...z, A. & Grabowski, S. BMC Bioinformatics 14, 160 (2013). Kraken: Krak...1099 days ago
- REST API The Representational State Transfer (REST) sample clients...p2 For details see Environment setup for REST Web Services and Examples for Perl REST Web Services Clients pages.
995 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment...929 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. &b...pression of FASTQ files, Bioinformatics, 2014; 30(15):2213&ndash...for raw sequencing data, Bioinformatics, 2018; 34(16):2748&ndash...ating k -mer statistics, Bioinformatics, 2017; 33(17):2759&ndash...915 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genomes Compa...nalysis of genomic sequences. cBARBEL -- Catfish Breeder and Researcher Bioinfor...729 days ago
- barrnap - https://github.com/tseemann/barrnap CPAT - https://github.co...;- https://www.arb-silva.de/ RNAmmer - http://www.cbs.dtu.dk/services/RNAmmer/ (web server, st...
596 days ago
Interesting Bioinformatics Resources !
1. a reproducible workflow. https://www.youtube.com/watch?v=s3JldKoA0zw This two minute video will change your mind on reproducible research 2. Parallel...593 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequence Repeats (SSRs), which are also known a...ences from various organisms. These are just a few examples of the many bioinfor...476 days ago
