Useful links to therapy, disease, drug and drug-target network data:
...equivalence evaluations http://www.fda.gov/cder/ob/HIDdb: Thomson Investigational drugs database including information on 107000 patents, 25000 investigational drugs and 80000 chemica...1485 days ago
Software for genome assembly !
...ceforge.net/projects/pb-jelly/ 5 ARCS scaffolding tool https://github.com/bcgsc/arcs 6 Redundans reduction and scaffolding tool https://github.com/Gabaldonlab/redundans 7 Arrow e...1395 days ago
10 NGS services companies around the globe !
...ered at Venlo, The Netherlands. The Company is engaged in providing Sample to Ins...th and South America, and Asia-Pacific. 5. GATC Biotech AG (Germany) GATC...incorporated in 1998 and is headquartered in Bangalore, India. Genotypic Technol...1310 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...novo genome assemblies. The DNA of the target organism is split up into millions...ied topics, identifying the DNA sequence of an organism is useful. Awareness of a.../wiki/How_To_Score_Genome_Assemblies_with_MauveInGAP-SV - https://sites.google.co...1255 days ago
Common Bioinformatics Interview Questions !
...sciences may be very disquieting, but the same concerns emerge time and again in my experience. So, it is...project autonomously, or they may need a person who can help direct and organize a team. In your response,...1249 days ago
Ancient whole genome duplication (WGD) detection tools !
...c1https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-017-0399-xGeNoGAP https://bmcbioinformatics.bi...LL_PREFIX=~/opt/miniconda3/envs/wgd/make -j 4 make insatall Take the sugarcane genome Saccharum spontan...1206 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P,...ng sequencing libraries. Quail, M. a et al. Nat. Methods 9, 10-1 (2012). GAGE: GAGE: A critical evaluatio...1098 days ago
Bioinformatics tools for telomere to telomere assembly !
...; workflow to rapidly produce high-quality de novo plant genomes (Luca Ermini @ermini_luca) Reference: https://www.pacb.com/blog/young-investigators-share-stellar-science-car...1042 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignm...928 days ago
Useful Bioinformatics Analysis Tools !
..., Bioinformatics, 2019; 35(22):4791–4793, KMC Memory frugal k-mer counter. •&...M., Grabowski, Sz., Debudaj-Grabysz, A., KMC 2: Fast and resource-frugal k-mer counting, Bioinfo...914 days ago