Results for "CA"
Blogs
10 NGS services companies around the globe !
...pany offers products for applications in the life sciences, on...h America, Europe, Latin America, Asia-pacific, and others. 2...bsidiaries of the company are Caliper Life Sciences, Improvisi...harma, biotech companies and academia. The company provides it...1310 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...llumina style short read sequencing. These reads can be either “single ende...A sequence may be useful in virtually any biological research because of the rele...1 illumina_R1.fastq.gz -2 illumina_R2.fastq.gz --careful --cov-cutoff auto -o res...1255 days ago
Common Bioinformatics Interview Questions !
...ns. 1. Tell Us About YourselfThis is a very typical opener in interviews. It's a...you need to make sure that your response is applicable to the job you're intervie...gested research path be if you were a successful candidate?Summarize the specific...1249 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics......); It is very similar to IPC::Open2 with the capability to capture all three...the process, i.e., STDIN, STDOUT, and STDERR. It can also be used with or without...688 days ago
Ancient whole genome duplication (WGD) detection tools !
...This article introduces the usage of wgd. Wgd cannot be installed directly wit...ent, so it is a little troublesome to install, because it depends on a lot of sof...enome is good, then wgd syncollinearity analysis can be used . It can help us fin...1206 days ago
Frequently used bioinformatics tools for viral genome analysis !
...ries. Quail, M. a et al. Nat. Methods 9, 10-1 (2012). GAGE: GAGE: A critical evaluation of genome assembl...s 14, 160 (2013). Kraken: Kraken: ultrafast metagenomic sequence classification using exact alignments. W...1098 days ago
Bioinformatics tools for telomere to telomere assembly !
...h; k-mer-based assembly and variant calling evaluation for improved...automated pipeline for the classification of long-read transcripts...gene amplicon data; performs allele calling while detecting polymorp...gh-quality de novo plant genomes (Luca Ermini @ermini_luca) Re...1043 days ago
Basic Structure of Snakemake Pipeline Run !
...nakefile. If you would like to override that you can specify it following the&nbs...scripts = directory for storing python scripts called by the snakemake formula....lly executing them. snakemake --dry-run User can execute rules of interest....985 days ago
Classification of SARS-CoV2 Variant !
...or determining whether a variant is a legitimate branch of an existing lineage: The variant should be transmitted from its original location to another "geographically distinct population"&mdash...941 days ago
Illumina based assembly pipeline steps !
...(Kraken 2; optional) Variant calling Read alignment (Bowtie...ar; amplicon data only) Duplicate read marking (picard; optio...) Clade assignment, mutation calling and sequence quality che...ignment, assembly and variant calling results (MultiQC)...928 days ago
