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How to install Perl modules manually, using CPAN command, and other quick ways
...version)libbiojava3-java - Java API to biological data and applications (default version)python-biopython-sql - Biopython support for the BioSQL database schemalibbtlib-perl - library...3991 days ago
List of gene ontology software and tools
...on information for PAGE analysis). Also EasyGO is also a GO annotation database, especially focus on agronomi...nctional analysis of experimental data. MetaCore is based on a curated database of human protein-protein, pro...3751 days ago
3949 days ago
A Brief Bioinformatics Tutorial
...in three main parts: In the Sequence part, you will see how to look efficiently for a particular protein sequence, how to blast it against the database of your choice to find homolo...3678 days ago
BioRuby :Ruby packages for biologist
...y code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinforma...nment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::PDB), FANTOM database(Bio::FANTOM), GFF (Bio::GFF)...3988 days ago
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100K Foodborne Pathogen Genome Project
...ent Technologies, today announced that it has added 20 newly completed genome sequences of foodborne disease-causing microorganisms to its public database at the National Center for Bi...3964 days ago
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Bioinformatician become producer/director !!!
...Algo Banya Apne. MOTIF mil gaya. BLASTana FASTAna. Hamari Sequence aapke pass hai. BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Database Search Kare Bioinformatician...3959 days ago
3742 days ago
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live...3938 days ago
3947 days ago
Retrieve NCBI GenBank records with a range of accession numbers
..., outputFile => undef, database => undef, returnType =...=> \$param{outputFile}, 'd|database=s' => \$param{database},...} ) ) or !( defined( $param{database} ) ) or !( defined( $par...etstart&retmax=$retmax&db=$param{database}&query_key=$query_key&WebEnv=...2957 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
...c/universe amd64 dos2unix amd64 7.3.4-3 [351 kB] Fetched 351 kB in 3s (130 kB/s) Selecting previously unselected package dos2unix. (Reading database ... 177704 files and director...1218 days ago
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XAMPP: Starting Apache fail Ubuntu
Once you install XAMMP on linux, the most common problem you face is Apache failure. To fix the issues please use following command to first stop and then again start it. sudo /etc/init.d/apache2 stop sudo /etc/init.d/mysql stop sudo /etc/init.d/proftpd stop sudo /opt/lampp/lampp start  ...Tags: Bioinformatics, Xammp, Server, Website, Apache, Database, MyPHP, Admin, Simple way, Linux Server, Linux Filesystem
3660 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Field terminator is "\t|\t" Row terminator is "\t|\n" nodes.dmp file consists of taxonomy nodes. The description for each node includes the following fields: tax_id -- node id in GenBank taxonomy datab...Tags: taxonomy, database, classification, tree
701 days ago
Comment on "Tools for RNA classification"
...ariance model approach to identify RNA homologs. It is particularly useful for identifying non-coding RNA (ncRNA) sequences. Rfam: Rfam is a database of RNA families and their cor...462 days ago
Comment on "Basic command-line to run BLAST"
BLAST compares a query sequence to a database of known sequences and identifies the most similar matches. Thi...ments, called "words," and searching for matches to those words in the database. It then expands the matches...462 days ago