Results for "matrices"
Blogs
Computer simulation of genetic mechanism !!
...l to generate data of related sequences along a given phylogeny, taking into account user defined system of neighbourhoods and instantaneous rate matrices. http://www.cibiv.at/software...3002 days ago
Bookmarks
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...ting very large grids. Input parameters' arguments may be specified in separate files. This is particularly convenient when specifying large matrices. Many adjustments have b...2800 days ago
- PATRISTICv1.0 is a java program that calculates patristic distances from large trees in a range of file formats and allows graphical and statistical interpretation of distance matrices calculated by other programs.
2490 days ago
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Pages
Bio++ : C Language libraries for your biological need
...entries. Phylogenetic reconstuction methods Parsimony (NNI)Distance matrices estimation and I/O to files i...statistics (mean, var, sd, correlation, information theory)Classes for matrices implementation.Linear algebra...3975 days ago
Awesome perl frameworks, libraries and software - PART 3
...mpleTable perl distribution lovelle/perl-disque - Perl client for Disque, an in-memory, distributed job queue leto/math--matrixreal - Matrices of real numbers in Perl Klor...2522 days ago
Top-level pages
Phylogenetic for Bioinformatics
...g various groups of organisms (for example, species or populations), which is discovered through molecular sequencing data and morphological data matrices. In other word, Phylogenetics...3974 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...l to generate data of related sequences along a given phylogeny, taking into account user defined system of neighbourhoods and instantaneous rate matrices. http://www.cibiv.at/software...3764 days ago
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News
Conserved Domain Database (CDD) version 3.11 released
...ls. The new version now contains the most recent Pfam release 27. Updates to the Conserved Domain Database include: Position-specific score matrices (PSSMs) have been recomputed...3755 days ago
- ...ll elements in a list. New function toTitleCase() in package tools, tailored to package titles. The matrix methods of cbind() and rbind() allow matrices as inputs which have 2^31 or...
3333 days ago
Opportunity posts
- ...vember 2015, to work on the development of bioinformatics approaches to aid analysis of data derived from the metabolomic profiling of biological matrices. The successful applicant wil...
3881 days ago
Bio-Scripts
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-W...2933 days ago
Comments
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
The FindMotif.pl program uses position-specific scoring matrices to search for sequences similar to a consensus sequence. Find more at http://www.people.vcu.edu/~elhaij/IntroBioinf/Notes/PSSM-Perl.html3664 days ago
