Results for "bins"
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...both accuracy and computational efficiency. Applying MetaBAT to an assembly from 1,704 human gut samples formed 1,634 genome bins (>200kb) in 3 hours, where 621 genome bins are >50% complete with <...2666 days ago
- ...Expectation-Maximization algorithm. Users can understand the underlying bins (genomes) of the microbes in...e binning summary page.Users can use MEGAN or similar software on MaxBin bins to find the taxonomy of each...
2666 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
...be imported simultaneously; users can choose which annotations to plot. Bins can be manually defined from...hods can be compared side-by-side. gbtools reports summary statistics of bins including marker gene complet...2646 days ago
- ...coding density) which highlight sequences outside the expected distributions of a typical genome. CheckM also provides tools for identifying genome bins that are likely candidates fo...
2223 days ago
mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
...r above a given threshold for each chromosome and genome-wide.quantized output that merges adjacent bases as long as they fall in the same coverage bins e.g. (10-20)threshold output...1681 days ago
RefKA: A fast and efficient long-read genome assembly approach for large and complex genomes
RefKA, a reference-based approach for long read genome assembly. This approach relies on breaking up a closely related reference genome into bins, aligning k-mers unique to each bin with PacBio reads, and then assembling each bin in parallel followed by a final bin-stitching step.1515 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
...ool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) u...1497 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...nd can be inspected anywhere using a web interface. Internal checks for the assembly and binning steps inform about the consistency of contigs and bins, allowing to spot potential c...1406 days ago
