HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures
The HNADOCK server is to predict the binding complex structure between two nucleic acid molecules through a hierarchical docking algorihtm of an FFT-based global search stra...1482 days ago
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wgd—simple command line tools for the analysis of ancient whole-genome duplications
wgd is a easy to use command-line tool for KS distribution construction named wgd. The wgd suite provides commonly used KS and colinearity analysis workflows together with tools for modeling and visu...1434 days ago
GROMACS: a versatile package to perform molecular dynamics
GROMACS is a versatile package to perform molecular...ns of particles. GROMACS is able to work with many biochemical molecules like pr...al combines the versatility of this mol...d. This will enable you to perform many sim...conda.github.io/recipes/gromacs/README.html1419 days ago
vsFilt: A tool to improve virtual screening by structural filtration of docking poses
The vsFilt is the first open application for post-dock...detect a wide range of interaction types that are known to be involved in molecular recognition, including hydr...and halogen bonds, ionic interactions, hydrophobic contacts, π-st...1309 days ago
COVID Moonshot: An international effort to DISCOVER A COVID ANTIVIRAL
The COVID Moonshot is an ambitious crowdsourced initiative to accelerate the development of a COVID antiviral. We work in...e open with no intellectual property constraints. This way, any scientist can...1284 days ago
Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in disting...accomplished on human mitochondrial DNA although the same approaches will work equally good...1095 days ago
RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.1038 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have...ketch search databases for all the things. But...nd waxing enthusiastic about other people's work. T...l talk about how we're building off of this work in fun! and...1035 days ago