1907 days ago
FLAS: fast and high throughput algorithm for PacBio long read self-correction.
FLAS, a wrapper algorithm of MECAT, to achieve high throughput long read self-correction while keeping MECAT's fast speed. FLAS finds additional alignments from MECAT prealigned long reads to improve the correction throughput, and removes misalignments for accuracy.1837 days ago
Miropeats: discovers regions of sequence similarity amongst any set of DNA sequences
...the verbosity of traditional alignment presentation styles. Miropeats enhances the utility of conventional DNA sequence comparisons when looking at long lengths of sequence similarit...1772 days ago
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Long-read sequencing technologies have become increasingly popular in genome project...nbsp;Saccharomyces cerevisiae, has many isolates currently being sequenced with long reads.1772 days ago
mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
...ion of proportion of bases covered at or above a given threshold for each chromosome and genome-wide.quantized output that merges adjacent bases as long as they fall in the same cove...1690 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
Miniasm is a great long-read assembly tool: straight-forward, effective...essentially made of stitched-together pieces of long reads. Racon is a great...errors. It's also very fast and well suited for long-read data. However, it operat...1674 days ago
1655 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-...dules: NextCorrect and NextGraph. NextCorrect can be used to correct TGS long reads with approximately 15%...1641 days ago
1631 days ago
HASLR: a tool for rapid genome assembly of long sequencing reads
HASLR is a tool for rapid genome assembly of long sequencing reads. HASLR is a hybrid tool which means it requires long reads generated by Third Gene...1615 days ago