Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome assemblies (up to mammalian-size). QUAST-LG is included in the QUAST ...1990 days ago
GenomeView: genome browser and annotation editor
GenomeView is a genome browser and annotation editor that displays reference sequence...ignments and graphs. Most major data formats are supported. Local and internet files can be loaded.This project ha...1978 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
ZENBU is a data integration, data analysis, and visualization system enhanced fo...quence alignment data which users can uploaded from BAM, BED, GFF and tab-text files. Please check our d...1976 days ago
MCAT: Motif Combining and Association Tool
This is a pipeline for finding motifs in fasta files.It can be run from the command line as follows: usage: orange_pipeline_refine.py [-h] [-w W] [--nmotifs NMOTIFS] [--iter ITER] [-c C][-s...1967 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display results produced b...y Notes 4: 137-138 (2004)] To use the UNIX versions, unzip and untar the files in an appropriate directory u...1896 days ago
jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
jackalope simply and efficiently simulates (i) variants fr...ms. It can either read reference genomes from FASTA files or simulate new ones. Genomic...statistics, phylogenies, Variant Call Format (VCF) files, and coalescent simulations&m...1773 days ago
GffCompare: Program for processing GTF/GFF files
The program gffcompare can be used to compare, merge, annotate and estimate accuracy of one or more GFF files (the “query” files), when compared with a reference annotation (also provided as GFF).1790 days ago
ALF--a simulation framework for genome evolution.
Artificial Life Framework (ALF) simulates a root genome into a number of related genomes. Result files include the resulting gene se...1685 days ago
Bioinformatics web development course
This web development course, targeted at Biology and Bioinformatics students, aims at...rays, cycles, conditional statements, functions, objects, regular expressions, files reading and manipulation et-c...1670 days ago
Minipolish: A tool for Racon polishing of miniasm assemblies
Miniasm is a great long-read assembly tool: straight-forward, effective and very...so very fast and well suited for long-read data. However, it operates on FASTA files, not the GFA graphs ...1643 days ago