PANEV: an R package for a pathway-based network visualization
PANEV (PAthway NEtwork Visualizer) is an R package set for gene/pathway-based network visualization. Based on information available on KEGG, it visualizes genes within a network of mu...1574 days ago
jtools : more efficient presentation of regression analyses
This package consists of a series of functions created by the...urposes as well. Support for the survey package’s svyglm obje..., johnson_neyman()) have been moved to a new package, aptly named interaction...1572 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks....1571 days ago
1555 days ago
shinyChromosome:a GUI for the interactive creation of non-circular whole genome diagrams
shinyChromosome is a graphical user interface for interactive creation of non-circular whole genome diagrams developed using the R Shiny package. To create single-genome plot by alig...1555 days ago
1547 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with cond...1532 days ago
NucDiff: In-depth characterization and annotation of differences between two sets of DNA sequences
.... It is possible to upload the results into genome browser for visualization and further inspection. It was written in Python and uses the NUCmer package from MUMmer[1] for sequence c...1488 days ago
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
...(for instance, NCBI SRA database ) or be your own data. Then they are fragmented and aligned to scaffolds using BWA mem algorithm in BWA package. In the package, we provided a compiled bwa,...1479 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assem...1475 days ago