genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read...Genbank, EMBL, blast, Mauve, and from user-generated tab files Plot several...automatic annotations for genomes, based on gene nam...2023 days ago
KEGG Mapper – Reconstruct Pathway
Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome an...ome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple organisms...of the gene list contains the user-defined gene ide...2023 days ago
EGAD: Ultra-fast functional analysis of gene networks
With the EGAD (Extending ‘Guilt-by-Association’ by Degree) package, we present a series of highly eff...idation and an analytic determination of the optimal prior to guess candidates genes ac...2021 days ago
FGENESH - Program for predicting multiple genes in genomic DNA sequences
FGENESH is the fastest (50-100 times faster than GenScan) and most accurate gene finder available - see the figure and the t...rojects, it was cited "the most successful (gene finding) program (Yu et...produce 87% of all high-evidence predicted genes (G...2015 days ago
Genome Annotation using MAKER tutorial !
MAKER is a great tool for annotating a reference genome using empirical and ab initiogene pre...2015 days ago
GeneOverlap: An R package to test and visualize gene overlaps
Overlapping gene lists can reveal biological meanings and may lead to no...in structure more dense or loose, the gene expression can be turned on o...stone H3 (H3K4me3) is associated with gene activation and its genome-wid...such kind of overlapping between the gene lis...2008 days ago
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UPhO: Scripts for homology and orthology assessment from genomic sequences.
UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more detailed explanations on its usage, installation and dependencies...1990 days ago