genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to rea...Genbank, EMBL, blast, Mauve, and from user-generated tab files Plot several...utomatic annotations for genomes, based on gene names...2013 days ago
KEGG Mapper – Reconstruct Pathway
Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome an...ome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple organisms...of the gene list contains the user-defined gene identi...2013 days ago
EGAD: Ultra-fast functional analysis of gene networks
With the EGAD (Extending ‘Guilt-by-Association’ by Degree) package, we present a series of highly ef...dation and an analytic determination of the optimal prior to guess candidates genes acros...2011 days ago
FGENESH - Program for predicting multiple genes in genomic DNA sequences
FGENESH is the fastest (50-100 times faster than GenScan) and most accurate gene finder available - see the figure and the t...rojects, it was cited "the most successful (gene finding) program (Yu et...produce 87% of all high-evidence predicted genes (Goff...2005 days ago
Genome Annotation using MAKER tutorial !
MAKER is a great tool for annotating a reference genome using empirical and ab initiogene predic...2005 days ago
GeneOverlap: An R package to test and visualize gene overlaps
Overlapping gene lists can reveal biological meanings and may lead to no...in structure more dense or loose, the gene expression can be turned on o...stone H3 (H3K4me3) is associated with gene activation and its genome-wid...such kind of overlapping between the gene lists...1997 days ago
1987 days ago
1983 days ago
1983 days ago
UPhO: Scripts for homology and orthology assessment from genomic sequences.
UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more detailed explanations on its usage, installation and dependencies....1980 days ago