Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome assemblies (up to mammalian-size). QUAST-LG is included in the QUAST ...2014 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts a...2010 days ago
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Hawkeye: an interactive visual analytics tool for genome assemblies
Genome sequencing remains an inexact science, and genome sequences can contain significant errors if th...-assemblies. Hawkeye is freely available and released as part of the open source AMOS project http://amos.sourc...2003 days ago
GenoViz: Visualization software for genomics
GenoViz provides software applications and re-usable components for data visualization a...information about IGB, visit http://bioviz.org.Source code for the project was host...nelab/integrated-genome-browser. We are still using Sourc...2002 days ago
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Genome assembly forensics: finding the elusive mis-assembly
We present the first collection of tools aimed at automated genome assembly validation. This work formaliz...e described is compatible with common assembly formats and is released, open-source, at http://amos.sourc...1978 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout...et website. You can also check out the UpSetR shiny app. Here is the sourc...1976 days ago