2170 days ago
LAMSA: fast split read alignment with long approximate matches
...MSA is open source and free for non-commercial use. LAMSA is mainly designed by Bo Liu & Yan Gao and developed by Yan Gao in Center for Bioinformatics, Harbin Institute of Technolo...2197 days ago
WhatsHap: fast and accurate read-based phasing
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long rea...2184 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...w to install and use KAT. For more extensive documentation please visit: https://kat.readthedocs.org/en/latest/ https://academic.oup.com/bioinformatics/article/33/4/574/2664339 ...1997 days ago
NanoPack: visualizing and processing long-read sequencing data
...le as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools. https://academic.oup.com/bioinformatics/article/34/15/2666/49349392110 days ago
Snakemake—a scalable bioinformatics workflow engine
Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow.2087 days ago
2084 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where addition...2056 days ago
2014 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
...nomes of interest without unfamiliar Command Line Environments. Moreover, the OAT_cmd command-line software can be integrated into preexisting bioinformatics pipelines.1986 days ago