EGAD: Ultra-fast functional analysis of gene networks
...sands of functional groups to be accomplished in minutes in cross-validation and an analytic determination of the optimal prior to guess candidates genes across multiple functional s...1996 days ago
FGENESH - Program for predicting multiple genes in genomic DNA sequences
FGENESH is the fastest (50-100 times faster than GenScan) and most accurate gene finder available - see the fi...ts, it was cited "the most successful (gene finding) program (Yu et...uce 87% of all high-evidence predicted genes (Goff et al. (2002) Sci...1990 days ago
Genome Annotation using MAKER tutorial !
MAKER is a great tool for annotating a reference genome using empirical and ab initiogene predictions. GMOD, the umbrella organization that includes MAKER, has some ni...1989 days ago
GeneOverlap: An R package to test and visualize gene overlaps
Overlapping gene lists can reveal biological meanings...n structure more dense or loose, the gene expression can be turned on o...tone H3 (H3K4me3) is associated with gene activation and its genome-wid...such kind of overlapping between the gene lists of different histone mo...1982 days ago
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UPhO: Scripts for homology and orthology assessment from genomic sequences.
UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more detailed explanations on its usage, installation and dependenci...1965 days ago
1964 days ago
Osprey: Network Visualization System
...s a software platform for the visualization of complex biological interaction networks. Osprey builds data-rich graphical representations from Gene Ontology (GO) annotated...1959 days ago