ALLHiC: Phasing and scaffolding polyploid genomes based on Hi-C data
The major problem of scaffolding polyploid genome is that Hi-C signals are frequently...cted between allelic haplotypes and any existing stat of art Hi-C scaffolding program links the allelic haplotypes...2020 days ago
Genome Annotation using MAKER tutorial !
MAKER is a great tool for annotating a reference genome using empirical and ab initi...ns. GMOD, the umbrella organization that includes MAKER, has some nice tutorials online...2019 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencin...2002 days ago
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gVolante: Completeness Assessment of Genome/Transcriptome Sequences
A brand-new web server, gVolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines CEGMA and BUSCO and (ii) browsing pre-computed completeness scores for publicly available data in its database section1996 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences. The Program first constructs all exact ma...modules. RT identification includes a dynamic programming to process frame shift. F...1996 days ago
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GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research
GRAbB is shown to be more efficient than MITObim in terms of speed, memory and...targets simultaneously and extracting homologous regions) of the new program are not matched by other programs. The program is available wi...1982 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display...ults produced by the genetic clustering program structure or by other similar programs. The figures produced by&nbs...will unzip the Windows version. Run the program by typing ./distruct in UNI...1925 days ago