Ra assembler - a de novo DNA assembler for third generation sequencing data
Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of...2370 days ago
Seal: SEquence ALignment evaluation suite
Seal is a comprehensive sequencing simulation and alignment tool evaluatio...nce genome from one or more FASTA files. Alternatively, generating an artificial ref...on input parameters of read length, coverage, sequencing error rate, and indel rate....2363 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation...2031 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for...reads outputted by third generation sequencing technology such as machines p...e reads produced by third generation sequencing technology, as the name sugge...t reads outputted by next generation sequencing technologies to correct long...2361 days ago
2333 days ago
UCSC SARS-CoV-2 Genome Browser
The UCSC SARS-CoV-2 Genome Browser (https://genome.ucsc.edu/covid19.html) is an ad...including conservation with similar viruses, immune epitopes, RT–PCR and sequencing primers and CRISPR guides. We...899 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined usin...paring human GENCODE genes (from GENCODE v30) to lncRNAs from other species identifie...Assembly Code Transcriptome lncRNAs...898 days ago
Reference-free prediction of rearrangement breakpoint reads
lideSort-BPR ( b reak p oint r eads) is based on a f...analyses of the number of neighboring reads. When applied to a dataset with a sequencing depth of 100×, it finds...2299 days ago
SciLifeLab tutorial for bioinformatics analysis !
...016 November - Uppsala2017 November - Uppsala RNA-seq course 2015 October - Up...sala2017 March - Uppsala2017 November - UppsalaRNAseq tutorials R Programming F...- Uppsala2017 Mars - Uppsala Single cell RNA sequencing analysis 2017 October - Upps...2259 days ago
2257 days ago