PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index
...the Pufferfish index. PuffAligner is able to produce highly sensitive alignments, similar to those of Bowtie2...h respect to the time, space and accuracy tradeoffs made by different alignment tools and provides a promisin...789 days ago
783 days ago
Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
...f orthogroups. Through the use of OrthoSNAP, many additional ortholog alignments can be generated from multi-...ce followed by supertree reconstruction. Users can specify a range of alignment filtering settings to retain...118 days ago
UniAligner: a parameter-free framework for fast sequence alignment
...igner) is the first parameter-free algorithm for sequence alignment that introduces a sequence-dependent alignment scoring that automatically ch...r most sequences, fail to construct biologically adequate alignments of extra-long tandem repeats...101 days ago
A web-based tool for sequence alignment statistics and innovative visualization
...mple tool that can be used in conjunction withpopulation genetics software (PDF) AlignStatPlot: An R package and online tool for robust sequence alignment statistics and innovative vis...75 days ago
MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
MIKE (MinHash-based k-mer algorithm). This algorithm is designed for the swift calculation of the Jaccard coefficient directly from raw sequencing reads and enables...71 days ago
Alvis: a tool for contig and read ALignment VISualisation and chimera detection
...and line tool that can generate visualisations for a number of common alignment analysis tasks. Alvis is a fast and portable tool that accepts input in a variety of alignment formats and will output produ...41 days ago
MetaGraph: Ultra Scalable Framework for DNA Search, Alignment, Assembly
The MetaGraph framework is designed to work with a wide range of input data sets, indexing from a few samples up to the contents of entire archives with hundreds of...9 days ago