HS3D: Homo Sapiens Splice Sites Dataset
...entification and characterization. From the complete GenBank (Primate Sequences Division) Rel.123 (162,557 en...s around each splice site have been extracted. After discarding sequences not including canonical GT&nd...1467 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both kno...1492 days ago
1463 days ago
1460 days ago
The wavefront alignment (WFA) algorithm
The wavefront alignment (WFA) algorithm is an exact gap-affine algorithm that takes advantage ofhomologous regions between the sequences to accelerate the alignment process. As opposed...1451 days ago
Predict Gene Ontology with sequences !
PANNZER (Protein ANNotation with Z-scoRE) is a fully automated service for functional annotation of prokaryotic and eukaryotic proteins of unknown function. The too...1441 days ago
pggb: the pangenome graph builder
This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). Its goal is to build a graph that is locally directe...1373 days ago
DADA2: Fast and accurate sample inference from amplicon data with single-nucleotide resolution
...key step due to the variable length of the ITS region. Short demonstrations of assigning taxonomy and assigning species to sequences....1315 days ago
GraphUnzip: Phases an assembly graph using Hi-C data and/or long reads.
...ient and accurate tool to unzip assembly graphs into their constituent haplotypes using long reads and/or Hi-C data. As GraphUnzip only connects sequences in the assembly graph that al...1228 days ago
294 days ago