1206 days ago
JumboDB: tool for de Bruijn graph construction
jumboDB tool for fast de Bruijn graph construction from long sequences (reads or genomes) with very low error rate. JumboDB is not a genome assembler by itself but rather a subroutine...1036 days ago
Kmer: a suite of tools for DNA sequence analysis
...wo genome assemblies (same species), or between two different genomes (cross species). Sim4db: Spliced alignment of cDNA and genomic sequences, from the same (sim4) or rela...1035 days ago
1035 days ago
979 days ago
920 days ago
Refseq viraal genome sequences !
List of all viruses on NCBI https://ftp.ncbi.nlm.nih.gov/refseq/release/viral/920 days ago
UniqueKmer: Generate unique KMERs for every contig in a FASTA file
...e and Genome file can be used for fastv: https://github.com/OpenGene/fastv, which is an ultra-fast tool to identify and visualize microbial sequences from sequencing data. https:...914 days ago
GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
...vided. User selected stretches (20kbp by default) of the genes genetic environment are extracted, annotated and aligned between all genomes. The sequences are then visualized, enabling...903 days ago
846 days ago