HASLR: a tool for rapid genome assembly of long sequencing reads
HASLR is a tool for rapid genome assembly of long sequencing reads. HASLR is a hybrid tool which means it requires long reads generated by Third Generation Sequencing technologies (such as PacBio or Oxford Nanopore) together with Next Generation Sequencing reads (suc...1615 days ago
Nucleus: Python and C++ code for reading and writing genomics data.
Nucleus is a library of Python and C++ code designed to make it easy to read, write and analyze data in common genomics file formats like SAM and VCF. In addition, Nucleus enables painless in...1613 days ago
1613 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
Rcorrector has an accuracy higher th...lt: ./) -t INT: number of threads to use (default: 1) -trim...rK INT: the maximum number of correction within k-bp window (def...-stdout: output the corrected reads to stdout (default: not used) -verbose: output some correction information to stdout (defaul...1611 days ago
Musket - a multistage k-mer spectrum based corrector
Musket is a well-established leading next-generation sequencing read error correction algorithm targetting Illumina...sp;k-mer spectrum approach and introduces three correction techniques in a multistage wo...1611 days ago
Tadpole: an assembler, error-corrector, and read-extender
Tadpole is a kmer-based assembler, with additional capabilities of error-correcting and extending reads. It does not do any complica...caffolding. To error-correct reads:tadpole.sh in=reads.fq out=c...50bp in each direction:tadpole.sh in=reads.fq o...1611 days ago
MEC: Contig Misassembly Correction
MEC, to identify and correct misassemblies in contigs. Firstly, MEC takes fragment coverage as the feature to det...tives from the candidate misassemblies based on the distribution of paired-end reads and...1611 days ago
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1608 days ago
pbmm2:A minimap2 frontend for PacBio native data formats
pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to support native PacBio in- an...1598 days ago