SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
SynVisio lets you explore the results of McScanX a popular synteny and collinearity detection toolkit and generate publication ready images. SynVisio requi...1487 days ago
HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures
The HNADOCK server is to predict the binding complex structure between two nucleic acid molecules through a hierarchical docking algorihtm of an FFT-based global search strategy and...1482 days ago
HS3D: Homo Sapiens Splice Sites Dataset
...ite have been extracted. After discarding sequences not including canonical GT–AG junctions (65+74), including insufficient data (not enough material for a 140 nucleotid...1475 days ago
Far Manager Commands and Links !
...ng files; and many other actions. https://www.farmanager.com/ Basic instruction at https://conemu.github.io/en/FarManager.html Plugins at https://plugring.farmanager.com/1464 days ago
PhiSpy: PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes
...ely prophage regions. Initial versions of PhiSpy were written by Sajia Akhter (sajia@stanford.edu) Edwards Bioinformatics Lab Improvements, bug fixes, and other changes were...1456 days ago
1434 days ago
PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
...y. However, these methods are computationally expensive, requiring O(n2) resources to identify RBHs. This is problematic, as the modern deluge of sequencing data means tha...1413 days ago
1413 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
...2015].The statistical analysis is based on DESeq2 R package [Anders and Huber 2010] which robustly identifies the differential abundant features as suggested in [McMurdie and Holmes...1409 days ago
parallelLastz: Lastz with multi-threads support.
...it. It can reduce run time linearly, and use almost equal memory as the original lastz program. This is useful when you lastz a big query file to a huge reference like human whole g...1404 days ago