1811 days ago
Retrieving Taxonomic Information with R
...(Phylostratigraphy) or to retrieve species specific taxonomic information when performing Divergence Stratigraphy (see Introduction for details).1739 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...he chromosome plot.Each chromosome is composed of loci(representing a specific range determined based on chromosome length) that, on hover, shows details about the annotations in that...1729 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
...for adapting input and output and producing more sensitive and accurate dovetail overlaps, and some useful utilities (see here for more details).1610 days ago
CLARK: Fast, accurate and versatile sequence classification system
...pervised sequence classification using discriminative k-mers. Considering two distinct specific classification problems (see the article for details), namely (1) the taxonomic cl...1569 days ago
Juicebox: Visualization and analysis software for Hi-C data
...ize and interactively (re)assemble genomes. Check out the Juicebox Assembly Tools Module website https://aidenlab.org/assembly for more details on how to use Juicebox for as...1563 days ago
HS3D: Homo Sapiens Splice Sites Dataset
...ear DNA including Complete CDS and more than one Exon have been selected, and 4523 exons and 3802 introns have been extracted from these entries. Details about extracted exons and int...1450 days ago
proActiv: Estimation of Promoter Activity from RNA-Seq data
...d provides absolute and relative promoter activity as output. The package can be used to identify active promoters and alternative promoters, the details of the method are described i...1388 days ago
QuasR: Quantification and annotation of short reads in R
...ngle R script can contain all steps of a complete analysis, making it simple to document, reproduce or share the workflow containing all relevant details.1023 days ago
Fix rewritable error of ELGG !
...ite rule can include a query string, or can lead to internal sub-processing, external request redirection, or internal proxy throughput. Further details, discussion, and examples, ar...929 days ago