RefKA: A fast and efficient long-read genome assembly approach for large and complex genomes
RefKA, a reference-based approach for long read genome assembly. This approach relies on breaking up a closely related reference genome into bins, aligning k-mers unique to each bin with PacBio reads, and then assembling each bin in parallel followed by a final bin-stitching step.1517 days ago
SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
...allowing the co-assembly of related metagenomes and the retrieval of individual genomes via binning procedures. Thus, SqueezeMeta features several unique characteristics: Co-assemb...1409 days ago
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UniqueKmer: Generate unique KMERs for every contig in a FASTA file
Generate unique k-mers for every contig in a FASTA file. Unique k-mer is consisted of k-mer keys (i.e. AT...e consisting of many contigs, and extract unique k-mers for each contig. The...encing data. https://github.com/OpenGene/UniqueKMER922 days ago
doubletrouble: identify duplicated genes from whole-genome protein sequences and classify
...d SSD-derived (small-scale duplication) gene pairs. Besides classifying gene pairs, users can also classify genes, so that each gene is assigned a unique mode of duplication. Users ca...113 days ago