2073 days ago
pWhatsHap: a parallel, high-performance version of WhatsHap
...same complexity exploring a number of possible solutions which is exponential in the coverage of the dataset. The parallel implementation on multi-core architectures allows for a re...2026 days ago
EGAD: Ultra-fast functional analysis of gene networks
...te functional properties in networks based on the guilt-by-association principle. These allow rapid controlled comparisons and analyses. Two of the core features are: a function pred...1996 days ago
HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
...ection policy for erroneous long reads, based on optimal combinations of decision weights obtained from short read alignments. HECIL’s core algorithm by introducing an i...1978 days ago
1968 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
...er assembly, the per-base error rate is about 97-98%, to further improve single base accuracy, please use NextPolish. NextDenovo contains two core modules: NextCorrect and Next...1609 days ago
GfaViz: flexible and interactive visualization of GFA sequence graphs
...mat for representing sequence graphs. Although it was originally conceived as a format for sequence assembly (hence the name), and this remains its core application, it is more gener...1591 days ago
Understanding your reads and mapping !
One of the best tutorial for beginners ... https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html1585 days ago
QuorUM: An Error Corrector for Illumina Reads
...cs we use. QuorUM is efficiently implemented making use of current multi-core computing architectures and i...e for large data sets (1 billion bases checked and corrected per day per core)1578 days ago
The Global Alliance for Genomics and Health (GA4GH)
...cy-framing and technical standards-setting organization, seeking to enable responsible genomic data sharing within a human rights framework. GA4GH core funders and sponsors enable o...1575 days ago