Carefully opt for human reference genome
...ference genomes given in these resources and suggests the following compressed FASTA file to be used as hg38/GRCh38 human reference genome. if you map reads to GRCh38 or hg38, use...1594 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further information about LACHESIS, including...2239 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...egions of any living organism allowing users to map chromosome elements (like gen...roduces a special plot viz. the "chromosome heatmap" that, in addition to mapping...like visualizing multiple sets, chromosome heat-maps, group annotations, adding h...1906 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
...ne https://github.com/lh3/minimap2 cd minimap2 && make # long sequ...dex first and then map ./minimap2 -d MT-human.mmi test/MT-huma...genomic reads ./minimap2 -ax map-ont ref.fa ont.fq.gz > aln...s asm-to-asm alignment ./minimap2 -x ava-pb reads.fa reads.fa...2202 days ago
CGView - Circular Genome Viewer
...a package for generating high quality, zoomable maps of circular genomes. Its pri...ile. CGView converts the input into a graphical map (PNG, JPG, or Scalable Vector...footnotes. In addition to the default full view map, the program can generate a s...2202 days ago
Heatmapper: web-enabled heat mapping for all
Heatmapper is a freely available web se...their data in the form of heat maps through an easy-to-use graphical interface. Heatmapper is a versatile tool that a...ata types and applications. Heatmapper allows users to generate,...;geopolitical (choropleth) heat maps. Heatmapper offers a numbe...2099 days ago
2095 days ago
Referee: Genome assembly quality scores
...tion in every read, however all of this information is lost in the assembly process. Referee summarizes the quality information from the reads that map to a site in an assembled gen...2064 days ago
1997 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
chromoMap provides interactive, configurable and elegant...hromosomes or chromosomal regions allowing users to map chromosome elements (like gen...ements as distinct colors. creating chromosome heatmaps. adjusting chromosome range...1758 days ago