URMAP, an ultra-fast read mapper
...ew read mapping algorithm. URMAP is an order of magnitude faster than BWA with comparable accuracy on several validation tests. On a Genome in a Bottle (GIAB) variant calling test with 30× coverage 2&tim...1327 days ago
COVID Moonshot: An international effort to DISCOVER A COVID ANTIVIRAL
...earning tools and Folding@home's crowdsourced supercomputer to determine which drug designs to send to our partners to make and test in the lab. With each drug design tested, we get closer to our goal....1276 days ago
RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.1030 days ago
PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index
...le balance with respect to the time, space and accuracy tradeoffs made by different alignment tools and provides a promising foundation on which to test new alignment ideas over larg...789 days ago
519 days ago
ExRec: Exclusion of Recombined DNA
ExRec (Exclusion of Recombined DNA) is a Python pipeline that implements the four-gamete test to filter out recombined DNA sites from up to thousands of DNA sequence loci. The pipeli...82 days ago