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gget is a free, open-source command-line tool and Python package that enables efficient querying of genomic databases. gget consists of a collection of separate but interoperable modules, each designed to facilitate one type of database querying in a single line of code.455 days ago
- This is the demo applicati...rot2's algorithms to organize search results into thematic folders. User interfaces Web Search Clustering organizes sea...Excel format, Solr or Elasticsearch; allows tuning of clustering...Apache Solr instance. Elasticsearch: queries an Elasticsearc...
449 days ago
- https://dbikard.github.io/genomenotebook/ Install pip install genomenotebook How to use Create a simple genome browser with a search bar. The sequence appears whe...
436 days ago
- The Genome Context Viewer (GCV) is a web-app that visualizes genomic context data pr...third party services. Specifically, it uses functional annotations as a unit of search and comparison. By adopting a...
404 days ago
homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes
This tutorial describes the usage of homologizer to phase gene copies into polyploid subgenomes. The tutorial is an abbreviated version of a soon-to-be publis...391 days ago
- Programming for Lovers (P4❤️) is a free online course that teaches programming using the Go programming language b...focuses on a single scientific problem and contains a core text accompanied by code a...
234 days ago
Fundamentals of Data Visualization by Claus O. Wilke
The book is meant as a guide to making visualizations that accurately reflect the data, tell a story, and look pro...collection of markdown documents into a coherent whole. The book’s source code i...21 days ago
MetaGraph: Ultra Scalable Framework for DNA Search, Alignment, Assembly
The MetaGraph framework is designed to work with a...d for downstream applications such as sequence search or differential assembly. Searcg link https://metagraph.ethz.ch/search Pre-print https:/...21 days ago
Panacus : A Counting Tool for Pangenome Graphs
panacus is a tool for calculating statistics for GFA files. It supports GFA files with P and W lines, but requires that the graph is&...15 days ago
BioKit: a set of tools dedicated to bioinformatics, data visualisation
BioKit is a set of tools dedicated to bioinformatics, data visualisation (biokit.viz), access to online biological data (e.g. UniProt, NCBI thanks to bioservices). It a...11 days ago
