kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to...2228 days ago
CrossMap: a program for convenient conversion of genome coordinates
...otation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file...2226 days ago
2226 days ago
GLEAN: an unsupervised learning system to integrate disparate sources of gene structure evidence
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.2224 days ago
EAGLER: a scaffolding tool for long reads.
...mbler and a set of long reads. The long reads are used to extend the contigs present in the NGS draft and possibly join overlapping contigs. EAGLER supports both PacBio and Oxford N...2222 days ago
2215 days ago
D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way
...t and Simple way – is an online tool designed to compare two genomes. It supports large genome and you can...rary. D-Genies also allows to display dot plots from other aligners by uploading their PAF or MAF align...2215 days ago
2214 days ago
2212 days ago
CGView - Circular Genome Viewer
...tput suitable for the web. Feature information and rendering options are supplied to the program using an...ttp://stothard.afns.ualberta.ca/cgview_server/ Paper https://academic.oup.com/bib/advance-article/doi/1...2206 days ago