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151 days ago
pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
ausarg/pipesnake is a bioinformatics best-practice analysis pipeline for phylogenom...s one container per process which makes it much easier to maintain and update software dependencies.131 days ago
OMArk: software for proteome (protein-coding gene repertoire) quality assessment
OMArk is a software for proteome (protein-coding gene repertoire) quality assessment. It provi...atabase, from which it exploits orthology relationships, and on the OMAmer software for fast placement of all pro...130 days ago
CGView.js is a Circular Genome Viewing tool
CGView.js is a Circular Genome Viewing tool for visualizing and interacting with small genomes. This software is an adaptation of the Java...96 days ago
ExRec: Exclusion of Recombined DNA
ExRec (Exclusion of Recombined DNA) is a Python pipeline tha...ive statistics for all loci and the results. This software also allows the user to outpu...cle/3/1/vbad174/7455250?searchresult=1Link to the software:https://github.com/Sammccarth...95 days ago
A web-based tool for sequence alignment statistics and innovative visualization
AlignStatPlot, a new R package and online tool that is well-documented and easy-to usefo.... It is a simple tool that can be used in conjunction withpopulation genetics software (PDF) AlignStatPlot: An R pac...88 days ago
ULTRA (ULTRA Locates Tandemly Repetitive Areas) : Effective Labeling of Repetitive Genomic Sequence
ULTRA is a tool to find and annotate tandem repeats inside genomic sequence. It is able...a maximum period of 4000). It can find highly decayed repeats missed by other software, and it will also be able to...22 days ago
Bactopia: a flexible pipeline for complete analysis of bacterial genomes
Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of...tasets to further enhance the analysis of your sequencing. Bactopia only uses software packages available from ...22 days ago