GRIDSS: the Genomic Rearrangement IDentification Software Suite
GRIDSS is a module software suite containing tools useful for the detection of genomi...well as a structural variation caller for Illumina seque...n graph genome-wide break-end assembly, split read, and read pair evidence.1507 days ago
medaka: Sequence correction provided by ONT Research
medaka is a tool to create a consensus sequence from nanopore sequencing data. Th...etworks applied from a pileup of individual sequencing reads against a draft assembl...based methods operating on basecalled data, and can be competitive with state-of-the...1506 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In...Commonly used biological software and example script files for diff...mpts to reduce the amount of time and e...Description Length SOAPaligner Sequencing Read Archive Toolkit...1506 days ago
1496 days ago
sunbeam: A robust, extensible metagenomics pipeline
Sunbeam is a pipeline written in snakemake that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses&nbs...sn't have pre-existing dependencies or admin privileges, and can be deployed on most Linux workst...1476 days ago
1475 days ago
merqury: Evaluate genome assemblies with k-mers
Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual. The k-mer spectrum of this read set can be used for independently evaluating assemb...1460 days ago
RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler
RNA-Bloom is a fast and memory-efficient de novo transcr...ler. It is designed for the following sequencing data types: single-end/paired-end bulk RNA-seq (strand-s...) paired-end single-cell RNA-seq (strand-specific/agnostic) nanopore RNA-seq...1455 days ago
PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
PyParanoid is a pipeline for rapid identification of homologous gene fa...rative genomics analysis. The "gold standard" for identifying homologs...problematic, as the modern deluge of seque...ould be performed on datasets of thousands of strains.1419 days ago
1345 days ago