HASLR: a tool for rapid genome assembly of long sequencing reads
HASLR is a tool for rapid genome assembly of long sequencing reads. HASLR is a hybrid tool which means it requires long reads generated by Third Generation Sequencing technolo...anopore) together with Next Generation Sequencing reads (such as Illumina) from the s...1613 days ago
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Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
Rcorrector has an accuracy higher t...(SEECER) designed for RNA-seq reads, and is more time and memory...ory footprint for 100 million reads, it can be run on virtually a...lt: ./) -t INT: number of threads to use (default: 1) -trim :...-stdout: output the corrected reads to stdout (default: not used)...1608 days ago
QuorUM: An Error Corrector for Illumina Reads
We produce trimmed and error-corrected reads that result in assemblies with longer contigs and fewer errors. We compared QuorUM against several published error correctors and found that i...1608 days ago
Tadpole: an assembler, error-corrector, and read-extender
Tadpole is a kmer-based assembler, with add...ies of error-correcting and extending reads. It does not do any complicat...caffolding. To error-correct reads:tadpole.sh in=reads.fq out=co...50bp in each direction:tadpole.sh in=reads.fq out=extended.fq mode=exten...1608 days ago
MEC: Contig Misassembly Correction
MEC, to identify and correct misassemblies in contigs. Firstly, MEC takes fragment co...itives from the candidate misassemblies based on the distribution of paired-end reads and the statistical analysis...1608 days ago
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Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep con...gives it greater sensitivity and fewer unclassified reads.1603 days ago
SLR-superscaffolder: A scaffold assemble pipeline for stLFR reads.
This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds. Here is an illustration of this pipeline:1599 days ago
CLARK: Fast, accurate and versatile sequence classification system
CLARK, a method based on a supervised sequence classification using discriminative&nb...he article for details), namely (1) the taxonomic classification of metagenomic reads to known bacterial genomes, a...1598 days ago