PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant acc...parisons while providing highest quality results, Contains a fully integrated data fil...2402 days ago
dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements)...quantify Transposable Elements in small samples of NGS datasets. It is very useful to qua...oes not require genome assembly and works on small datasets...2400 days ago
MinION_GC: An R script to do some QC on MinION data
Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive....n a single, small, .txt summary file. So it's a lot quicker than most other things out...2399 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a database...2399 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro su...itu Hi-C, DNase Hi-C, Micro-C, capture-C, capture Hi-C or HiChip data. &...2397 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
ACANA is an accurate and consistent alignment tool for DNA sequences. ACANA is spec...accurate alignment tool, ACANA is particularly useful in comparative sequence analysis for identifying conserved fun...2397 days ago
Harvest: a suite of core-genome alignment and visualization tools
Harvest is a suite of core-genome alignment and visualization tools for quickly ana...n, and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive vis...2395 days ago
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SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.2388 days ago